Model info
Transcription factorSP1
ModelSP1_HUMAN.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length19
Quality
C
ConsensusvvvvvvKGGGMGGRRvbnv
wAUC
0.7403190197502194
Best AUC
0.7802564830286888
Benchmark datasets6
Aligned words3064
TF familyThree-zinc finger Kr├╝ppel-related factors{2.3.1}
TF subfamilySp1-like factors{2.3.1.1}
HGNC11205
EntrezGene6667
UniProt IDSP1_HUMAN
UniProt ACP08047
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.5861
0.0005 4.6761
0.0001 6.9001
PCM
ACGT
01532.298554.4721558.689287.763
02645.025510.5771380.483397.137
03481.911412.0261741.913297.372
04762.118586.5031304.265280.336
051050.591521.54935.369425.723
06625.561369.7521709.8228.109
07316.28763.9382140.552412.445
08475.55314.02425.30318.366
098.88713.5252899.43311.378
1019.21433.882877.3162.812
11536.2921899.50362.239435.188
1250.98428.3662757.0496.832
1343.80943.5112725.198120.705
14482.124146.932184.576119.591
15248.635206.7662341.613136.209
16432.0651610.179561.294329.685
17279.1991269.121767.906616.996
18790.055460.4221089.248593.497
19607.025660.0411391.796274.36
PWM
ACGT
01-0.319-0.2790.753-0.931
02-0.128-0.3610.631-0.611
03-0.418-0.5740.864-0.899
040.038-0.2230.575-0.957
050.359-0.340.243-0.542
06-0.158-0.6820.845-1.162
07-0.837-2.4121.069-0.573
08-0.432-3.8281.194-3.587
09-4.213-3.8581.373-4.007
10-3.546-3.021.365-5.03
11-0.3120.95-2.438-0.52
12-2.63-3.1871.322-2.007
13-2.776-2.7821.311-1.791
14-0.418-1.5971.09-1.8
15-1.076-1.2591.159-1.672
16-0.5270.785-0.266-0.796
17-0.9610.5470.046-0.172
180.074-0.4640.395-0.211
19-0.188-0.1050.64-0.979