Model info
Transcription factorEGR2
ModelEGR2_HUMAN.H10MO.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length11
Quality
C
ConsensusdGvGKGGGCGK
wAUC
Best AUC
Benchmark datasets
Aligned words23
TF familyThree-zinc finger Kr├╝ppel-related factors{2.3.1}
TF subfamilyEGR factors{2.3.1.3}
HGNC3239
EntrezGene1959
UniProt IDEGR2_HUMAN
UniProt ACP11161
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.7272
0.0005 5.5672
0.0001 7.1993
PCM
ACGT
015.1722.6447.8165.057
021.0340.019.6550.0
034.9438.6214.2532.874
040.00.020.690.0
051.0340.5755.97713.103
060.00.020.690.0
070.00.020.690.0
080.00.020.690.0
091.03414.8280.04.828
100.00.017.7012.989
112.8160.74713.5063.621
PWM
ACGT
010.0-0.5560.369-0.02
02-1.197-2.0581.236-2.058
03-0.040.458-0.169-0.49
04-2.058-2.0581.286-2.058
05-1.197-1.4930.1270.849
06-2.058-2.0581.286-2.058
07-2.058-2.0581.286-2.058
08-2.058-2.0581.286-2.058
09-1.1970.966-2.058-0.06
10-2.058-2.0581.136-0.459
11-0.506-1.3720.878-0.303