Model info
Transcription factorEgr1
ModelEGR1_MOUSE.H10MO.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length11
Quality
A
ConsensusnGCGKGGGYGK
wAUC
Best AUC
Benchmark datasets
Aligned words2104
TF familyThree-zinc finger Kr├╝ppel-related factors{2.3.1}
TF subfamilyEGR factors{2.3.1.3}
MGI95295
EntrezGene13653
UniProt IDEGR1_MOUSE
UniProt ACP08046
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.6221
0.0005 4.7641
0.0001 7.0665
PCM
ACGT
01285.897355.779600.935644.414
0283.035113.6921665.80824.49
03113.1851562.98635.147175.707
046.8291.8681874.853.478
0517.51125.252925.963918.298
06143.21636.451702.3854.974
0748.106124.1691700.41114.339
0822.52519.391845.110.0
09168.1491412.31713.109293.449
1040.78213.6791803.33829.226
11170.947122.4041150.216443.457
PWM
ACGT
01-0.498-0.2810.2410.311
02-1.719-1.4111.259-2.888
03-1.4151.195-2.549-0.981
04-3.995-4.8381.377-4.481
05-3.195-2.860.6720.664
06-1.183-2.5141.28-4.235
07-2.249-1.3241.279-3.374
08-2.965-3.1031.361-5.526
09-1.0241.094-3.453-0.472
10-2.407-3.4151.338-2.723
11-1.008-1.3380.889-0.062