Model info
Transcription factorEGR1
ModelEGR1_HUMAN.H10MO.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length18
Quality
A
ConsensusvvdvdRhGKGGGYRKddv
wAUC
0.8767817638972311
Best AUC
0.9327577341456722
Benchmark datasets9
Aligned words500
TF familyThree-zinc finger Kr├╝ppel-related factors{2.3.1}
TF subfamilyEGR factors{2.3.1.3}
HGNC3238
EntrezGene1958
UniProt IDEGR1_HUMAN
UniProt ACP18146
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.4971
0.0005 5.3851
0.0001 7.1931
PCM
ACGT
0194.81595.781219.60489.801
02104.434103.291223.10569.17
03106.14572.365225.83895.652
04135.00270.489234.02660.483
05111.10237.004190.086161.808
0657.940.948378.40822.744
0784.07242.28824.622149.02
0820.33520.953404.31654.396
0917.4343.597225.574253.394
1080.4341.828402.30915.43
113.6820.0487.8998.419
1215.55819.276457.2867.88
13131.147225.9742.997139.882
1490.1815.625374.8129.383
1536.3215.638387.49970.543
16117.95245.812266.92669.309
17138.96848.789229.18283.061
18109.25391.741244.61854.387
PWM
ACGT
01-0.272-0.2630.558-0.326
02-0.177-0.1880.574-0.582
03-0.161-0.5380.586-0.264
040.076-0.5630.621-0.713
05-0.116-1.1890.4150.255
06-0.755-1.0911.099-1.65
07-0.3910.656-1.5760.174
08-1.755-1.7271.165-0.816
09-1.897-3.2010.5850.7
10-0.434-3.6221.16-2.008
11-3.185-4.41.353-2.541
12-2.001-1.8041.288-2.596
130.0470.587-3.3250.111
14-0.322-2.871.09-1.409
15-1.206-2.8681.123-0.563
16-0.057-0.9830.752-0.58
170.105-0.9220.601-0.403
18-0.133-0.3050.665-0.816